Muscidae exhibits extraordinary diversity in morphology, life history, and behaviour at both immature and adult stage. In muscid immature stages, one can find a wide range of feeding habits, ranging from various types of decomposing organic matter, dung, fungi, through to live invertebrates and vertebrates [1]. The filtering of decomposing material, by means of saprophagy or coprophagy, is present in many species of Muscidae. On the other hand, obligatory carnivores successfully reach maturity only after having access to living prey and this strategy is correlated with the reduction in the number of free-living larval stages [2]. However, a mixed strategy is also present in some lineages and in facultative predators, early larval instars are filter feeding saprophages, while the last instar may reveals predatory behaviour. Some representatives of Atherigona Rondani are phytophages associated with various species of grasses (Poaceae). Subcutaneous parasites of birds nestlings evolved in Passeromyia Rodhain & Villeneuve and Philornis Meinert and endoparasites of millipedes in Eginiini [1]. The larvae of some Azeliini, Muscini and Reinwardtiini can be involved in cases of secondary myiasis in people and animals. On the other hand, some species may be highly beneficial to humans as biological agents of pest control of forensic indicators [3].
In Muscidae, various changes from the cyclorrhaphan ground-plan of the cephaloskeleton in the number, shape, and size of sclerites can be found. For example, in second instars robust mouthhooks with accessory ventral teeth occur in Atherigona that rasp hard, plant material; in second instars of some coprophagous species partial (Fig. 1B) or entire (Fig. 1C) reduction of the mouthhooks is present; in third instars, sharply pointed mouthhooks with a long and slender basal sclerite may be found in obligatory predators (Fig. 1H); an intermediate sclerite is fused with the basal sclerite in plant cutting Atherigona (Fig. 1F); in phytophagous species mouthhooks are reduced and their role is taken by enlarged accessory oral sclerites (Fig. 1F); accessory oral sclerites below the apical part of the mouthhooks are present within lineages revealing facultative and obligatory carnivory (Fig. 1D, H, G, H) [1,4].
Fig. 1. Examples of details of the cephaloskeleton of second (A–C) and third (D–I) instar larvae of Muscidae: A) Azeliini, facultative predator; B) Muscini, saprophage; C) Stomoxyini, coprophage; D) Reinwardtiini, facultative predator; E) Atherigoninae, facultative predator; F) Atherigoniinae, phytophage; G) Azeliini, facultative predator; H) Azeliini, obligatory predator; I) Muscini, coprophage. A–C from Ferrar (1987).
Facultative predators, in the third instars of the great majority of muscid species known from immature stages are equipped with the highest number of additional sclerites in the cephaloskeleton [1]. According to Hennig [5], such a fully equipped cephaloskeleton is the ancestral state for the family. In this case, the typical cyclorrhaphan simple cephaloskeleton without accessory oral sclerites, which is often found within purely saprophagous Muscidae, should be considered a derived state (Fig. 2A). Consequently, the shift from facultative carnivory to saprophagy should be associated with the secondary reduction and loss of accessory oral sclerites, i.e., a simplification to a form similar to the cyclorrhaphan ground plan. On the other hand, according to Kutty et al. [2], saprophagy, not a mixed strategy, is the ancestral feeding strategy of Muscidae (Fig. 2B). This result is in agreement with the assumption that filtering of decomposing material is an ancestral strategy for immature stages of the Cyclorrhapha [6]. Based on the present state of knowledge of muscid larval morphology [1,3,7,8], under the assumption of Kutty et al. [2] the structure of the cephaloskeleton is most probably not correlated with feeding strategy. According to the results of Kutty et al. [2], in saprophages either the typical cyclorrhaphan ground-plan cephaloskeleton is present, or accessory oral sclerites may occur in the apical part of the mouthhook.
Fig. 2. Evolution of Muscidae feeding strategies and details of larval morphology: A) Shifts to saprophagy, phytophagy, and obligatory carnivory from ancestral facultative carnivory (Hennig 1965); B) Shifts to coprophagy, phytophagy, and carnivory from ancestral saprophagy (Kutty et al. 2014); C) Cyclorrhapha ground-plan of the cephaloskeleton of the third instar larva. In A and B, possible cephaloskeletons are presented for different feeding strategies under a given hypothesis. Abbreviations: bs, basal sclerite, is, intermediate sclerite; mh, mouthhook. Accessory sclerites, below apical part of mouthhooks, are marked in red.
The interpretation of the Muscidae as a family and their classification into higher-level taxa has been a matter of debate for many years. Previous concepts included in Muscidae taxa that are currently relevant to our understanding of the Oestroidaea. This can be observed, for example, in the number of proposed subfamilies ranging from four, i.e., Fanniinae, Muscinae, Mydaeinae and Phaoniinae (Hennig 1955–1964), to up to 15, i.e., Athomyiinae, Cobboldinae, Coenosiinae, Eginiinae, Fanniinae, Fucelliinae, Gasterophilinae, Glossininae, Gyrostigminae, Lispinae, Muscinae, Phaoniinae, Prosthetosominae, Rutteniinae and Stomoxydinae [10]. The concept of the family as understood today is a relatively recent advantage and is a result of the exclusion of the Fanniinae and elevating the group to the family level and a transfer of the genus Coenosopsia Malloch to Anthomyiidae [11]. Significant progress in higher-level classification has been made with the advent of morphological data analysis in realms of phylogenetic concepts [e.g., 5,12–15]. Incorporation of molecular data was another breakthrough in the understanding of relationships within the family [2,16–21]. The current concept of the Muscidae was widely supported with molecular data. Many results have been consistent with morphology-based hypotheses, particularly the classificatory system proposed by Fan [22]. While recent results from mS-seq, AHE and RAD-seq analyses are at odds with adult morphology-based classifications [2,16–21], are partially supported by immature stage morphology and natural history. Some morphological characters from adults, considered for a long time of primary importance for classification of Muscidae, are currently recognized as results of convergent evolution, as in the case of the shape of wing veins, presence of setae on the hind coxa or presence of spines on the inner surface of the cercal plate in males.
In our work, congruence among various molecular approaches will be used to build confidence for particular phylogenetic hypotheses. Morphological data from adult and will be used as corroboration of certain nodes in our phylogenetic trees in order to build a new robust classification system for the Muscidae.
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The following classification results from a compilation of the traditional consepts (Carvalho et al. 2005; Couri and Pont 2000; Nihei and Carvalho 2007; Pérez et al. 2020; Pont 1980, 1986, 1989) based predominantly on adult insects morphology with those arising from the immature stages (Skidmore 1985; Walczak et al. 2023) and molecular phylogenetic studies (e.g., Kutty et al. 2014, 2019; Haseyama et al. 2015; Grzywacz et al. 2017, 2021; Walczak et al. 2023).
Atherigoniinae
Atherigona Rondani
Azeliinae
Achanthiptera Rondani, Australophyra Malloch, Azelia Robineau-Desvoidy, Chuntiania Xue, Drymeia Meigen, Huckettomyia Pont and Shinonaga, Hydrotaea Robineau-Desvoidy, Mesembrina Meigen, Micropotamia Carvalho, Neohydrotaea Malloch, Polietes Rondani, Potamia Robineau-Desvoidy, Thricops Rondani, Xestomyia Stein
Coenosiinae
Altimyia Couri, Amicitia Emden, Anaphalantus Loew, Andersonosia Emden, Apsil Malloch, Aztecamyia Gomes, Fogaça and Carvalho, Bithoracochaeta Stein, Brevicosta Malloch, Cephalispa Malloch, Coenosia Meigen, Cordiluroides Albuquerque, Insulamyia Couri, Limnospila Schnabl, Lispocephala Pokorny, Macrorchis Rondani, Microcalypta Stein, Neodexiopsis Malloch, Notoschoenomyza Malloch, Orchisia Rondani, Oxytonocera Stein, Palpilongus Couri and Carvalho, Parvisquama Malloch, Pentatricia Stein, Pilispina Albuquerque, Plumispina Albuquerque, Pseudocoenosia Stein, Pygophora Schiner, Reynoldsia Malloch, Schoenomyza Haliday, Schoenomyzina Malloch, Spanochaeta Stein, Spathipheromyia Bigot, Stomopogon Malloch, Sumapazomyia Fogaça, Couri, Pérez and Carvalho
Agenamyia Albuquerque, Albertinella Couri and Carvalho, Anthocoenosia Xue and Xiang, Camptotarsopoda Strand, Drepanocnemis Stein, Exsul Hutton, Heliographa Malloch, Idiohelina Malloch, Limnohelina Malloch, Limnophora Robineau-Desvoidy, Lispe Latreille, Lispoides Malloch, Neolimnophora Schnabl, Ocypodomyia Pont, Pachyceramyia Albuquerque, Paracoenosia Malloch, Paralimnophora Lamb, Rhabdotoptera Stein, Spilogona Schnabl, Syllimnophora Speiser, Tapantiomyia Michelsen, Tetramerinx Berg, Thaumasiochaeta Stein, Villenuevia Schnabl and Dziedzicki, Xenomyia Malloch
Cyrtoneurininae
Arthurella Albuquerque, Cariocamyia Snyder, Charadrella Wulp, Chortinus Aldrich, Cyrtoneurina Giglio-Tos, Cyrtoneuropsis Malloch, Itatingamyia Albuquerque, Mulfordia Malloch, Neomuscina Townsend, Neomusciniopsis Albuquerque and Lopes, Neurotrixa Shannon and Del Ponte, Pseudoptilolepis Snyder
Muscinae
Biopyrellia Townsend, Curranosia Paterson, Dasyphora Robineau-Desvoidy, Deltotus Séguy, Hennigmyia Peris, Mitroplatia Enderlein, Morellia Robineau-Desvoidy, Musca Linnaeus, Myiophaea Enderlein, Neomyia Walker, Neopyrellia Pont, Polietina Schnabl and Dziedzicki, Pyrellia Robineau-Desvoidy, Pyrellina Malloch, Sarcoprousca Townsend, Ziminellia Nihei and Carvalho
Bruceomyia Malloch, Haematobia Le Peletier and Serville, Haematobosca Bezzi, Haematostoma Malloch, Neivamyia Pinto and Fonseca, Parastomoxys Zumpt, Prostomoxys Zumpt, Rhinomusca Malloch, Stomoxys Geoffroy, Stygeromyia Austen
Mydaeinae
Afromydaea Malloch, Bryantina Malloch, Chaetopapuaia Vockeroth, Dimorphia Malloch, Graphomya Robineau-Desvoidy, Gymnodia Robineau-Desvoidy, Gymnopapuaia Vockeroth, Hebecnema Schnabl, Helinomydaea Vockeroth, Hemichlora Wulp, Lasiopelta Malloch, Mydaea Robineau-Desvoidy, Myospila Rondani, Opsolasia Coquillett, Papuaia Malloch, Papuaiella Vockeroth, Pseudohelina Vockeroth, Scenetes Malloch, Scutellomusca Townsend, Sinopelta Xue and Zhang
Reinwardtiinae
Aethiopomyia Malloch, Alluaudinella Giglio-Tos, Balioglutum Aldrich, Brachygasterina Macquart, Callainireinwardtia Savage, Calliphoroides Malloch, Chaetagenia Malloch, Correntosia Malloch, Dalcyella Carvalho, Eginia Robineau-Desvoidy, Fraserella Steyskal, Muscina Robineau-Desvoidy, Neohelina Malloch, Ochromusca Malloch, Palpibracus Rondani, Passeromyia Rodhain and Villeneuve, Philornis Meinert, Psilochaeta Stein, Reinwardtia Brauer and Bergenstamm, Syngamoptera Schnabl, Synthesiomyia Brauer and Bergenstamm, Xenotachina Malloch
Phaoniinae
Auria Malloch, Dichaetomyia Malloch, Tamilomyia Emden
Beccimyia Pont, Buccophaonia Emden, Chaetophaonia Carvalho and Nihei, Dolichophaonia Carvalho, Helina Robineau-Desvoidy, Hennigiola Pont, Lophosceles Ringdahl, Metopomyia Malloch, Phaomusca Malloch, Phaonia Robineau-Desvoidy, Phaonidia Emden, Phaonina Emden, Pictia Malloch, Polletella Carvalho and Haseyama, Prohardyia Pont, Rhynchomydaea Malloch, Sinophaonia Xue, Souzalopesmyia Albuquerque